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Volume 3

The Pulse of Atoms

Mastering Classical Molecular Dynamics and Macroscopic Ensemble Averages

Unlock the hidden dance of the microscopic world where Newton’s laws bring chemistry to life.

Strategic Objectives

• Master the core principles of Newtonian mechanics applied to molecular systems.

• Understand how to bridge the gap between atomic trajectories and macroscopic properties.

• Learn the intricacies of empirical force fields and potential energy surfaces.

• Gain proficiency in time-integration algorithms and ensemble sampling techniques.

The Core Challenge

Static models fail to capture the chaotic, time-dependent reality of molecular motion and thermodynamic evolution.

01

The Foundation of Motion

02

The Deterministic Universe

03

The Energy Landscape

04

The Force Field Blueprint

05

Non-Bonded Interactions

06

The Electrostatic Grid

07

Integrating the Future

08

Temporal Precision

09

Managing the Infinite

10

The Thermodynamic Bridge

11

Thermal Control

12

Under Pressure

13

The Ensemble Perspective

14

Ergodicity and Sampling

15

Molecular Topology

16

Water and Solvation

17

The Speed of Computing

18

Analyzing the Chaos

19

Dynamic Properties

20

High-Performance MD

21

The Future of Simulation

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